. Earth Science News .
WATER WORLD
From a bucket of seawater a new understanding of the ocean

A graphic artist's rendition of a single-celled organism in the ocean, trailing its sequenced DNA. Credit: Susanne Ruemmele.
by Staff Writers
New Brunswick, NJ (SPX) May 10, 2011
From a bucket of seawater, scientists have unlocked information that may lead to deeper understanding of organisms as different as coral reefs and human disease. By analyzing genomes of a tiny, single-celled marine animal, they have demonstrated a possible way to address diverse questions such as how diseased cells differ from neighboring healthy cells and what it is about some Antarctic algae that allows them to live in warming waters while other algae die out.

Debashish Bhattacharya, professor of ecology, evolution and natural resources in Rutgers' School of Environmental and Biological Sciences, and Ramunas Stepanauskas and Hwan Su Yoon of the Bigelow Laboratory of Ocean Sciences, have published their results in the journal Science.

They used sophisticated new technologies to sequence the genomes of individual picobilophytes, tiny microbes first discovered in 2007. At less than 10 micrometers across, they are some of the tiniest marine animals known to science.

"If we can peer inside the genome of a single cell and reconstruct its history, we can do that for many cells and figure out their interactions with other cells in the environment," Bhattacharya said.

For example, why do different cancer cells from the same tumor grow at different rates? Their genomes might contain the answer, and the answer might lead to more effective treatment strategies.

"Our results demonstrate how single cell genomics opens a window into the natural drama that constantly takes place in each drop of seawater - a drama featuring predation, viral infections, and the divergent fate of close relatives," Stepanauskas said.

"The outcomes of this drama have profound effects on the lives of larger marine organisms, such as commercially valuable fish."

Bhattacharya and Oscar Schofield, professor of marine science, are now working to apply these techniques to Antarctic algae. Some species traditionally found along the Western Antarctic Peninsula are dying off as the water warms, and others, not seen before there, are moving in. If Bhattacharya and Schofield can sequence the genomes of those algae cell by cell, as he and

Stepanauskas have done with picobilophytes, they might learn much more about how climate change has affected the ecosystem in that region.

Bigelow Laboratory's Single Cell Genomics Center, established by Stepanauskas and his colleagues, has analyzed more than 150,000 individual microbial cells, shedding new light on the invisible majority of our planets biological diversity.

When picobilophytes were discovered in 2007, scientists believed they were photosynthetic - that is, that, like green plants, they converted carbon dioxide into food, using energy from sunlight. But these tiny cells have been impossible to culture in the laboratory and this may have been because they were starving, deprived of their natural food sources.

For this project, the scientists hauled 50 milliliters (a handful) of seawater out of Boothbay Harbor in Maine, the home of the Bigelow Laboratory. They used a technique called fluorescence activated cell sorting to separate photosynthetic from non-photosynthetic (heterotrophic) cells.

They were surprised to find that picobilophytes lacked chlorophyll. They sequenced the genomes of three picobilophytes and were excited to find, in one of them, a new virus, whose circular genome they were able to reconstruct. They were also able to identify and sequence the DNA of creatures the picobilophytes had presumably eaten.

For a marine biologist like Bhattacharya, however, the immediate prospects in his own field hold the most promise. "There is a lot of uncharted biodiversity on our planet that we can't get a hold of because we can't cultivate the cells," he said.

"Now, if you can reconstruct the nuclear genomes of individual cells in a sample of seawater, you can begin to infer not only the numbers and kinds of organisms that inhabit a particular ecosystem but also the functions of all the genes in their individual genomes."



Share This Article With Planet Earth
del.icio.usdel.icio.us DiggDigg RedditReddit
YahooMyWebYahooMyWeb GoogleGoogle FacebookFacebook



Related Links
Rutgers University
Water News - Science, Technology and Politics



Memory Foam Mattress Review
Newsletters :: SpaceDaily :: SpaceWar :: TerraDaily :: Energy Daily
XML Feeds :: Space News :: Earth News :: War News :: Solar Energy News


WATER WORLD
'Fool's Gold' from the deep is fertilizer for ocean life
Washington DC (SPX) May 10, 2011
Similar to humans, the bacteria and tiny plants living in the ocean need iron for energy and growth. But their situation is quite different from ours--for one, they can't turn to natural iron sources like leafy greens or red meat for a pick-me-up. So, from where does their iron come? New research results published in the current issue of the journal Nature Geoscience point to a sourc ... read more







WATER WORLD
Japan nuclear evacuees make brief trip home

Japan's Kan declines PM's pay over nuclear crisis

China claims 'victory' in rebuilding quake zone

No country immune, UN chief warns as disaster risks grow

WATER WORLD
Bats lend an ear to sonar engineering

Researchers get new view of how water and sulfur dioxide mix

Russia says fire put out near radioactive facility

More effective and less risky when you paint the hull of your boat

WATER WORLD
Laos agrees to new study on Mekong dam

Green roofs as a cost-effective way to keep water out of sewers

Massive hydroelectric project gets green light in Chile

Tree rings tell a 1,100-year history of El Nino

WATER WORLD
Stricken Russian nuclear icebreaker due at port: official

Nuclear leak forces Russian icebreaker back to port

Arctic warming could raise oceans 5 feet

Record Arctic warming to boost sea level rise

WATER WORLD
Availability of Local Food Key to Improving Food Security

Soils of U.K., Europe drying out

Indonesia turns ASEAN focus to food, energy security

US farmers dodge the impacts of global warming at least for now

WATER WORLD
Tropical storm Aere kills 15 in Philippines

Life pauses on rumbling Philippine volcano

Floods along mighty Mississippi swamp farms, homes

Bolivia at risk of megaquake: study

WATER WORLD
Burkina Faso ruling party says opposition aiming for coup

Chinese army gives rocket launchers, weapons to Sierra Leone

Disaster-hit Japan will not cut aid to Africa: spokesman

Diehard pro-Gbagbo militia begin to disarm

WATER WORLD
Indian brides told to put down their mobile phones

Super-healing researcher follows intuition

No nuts for 'Nutcracker Man'

Why the eye is better than a camera at capturing contrast and faint detail simultaneously


The content herein, unless otherwise known to be public domain, are Copyright 1995-2010 - SpaceDaily. AFP and UPI Wire Stories are copyright Agence France-Presse and United Press International. ESA Portal Reports are copyright European Space Agency. All NASA sourced material is public domain. Additional copyrights may apply in whole or part to other bona fide parties. Advertising does not imply endorsement,agreement or approval of any opinions, statements or information provided by SpaceDaily on any Web page published or hosted by SpaceDaily. Privacy Statement